Sharaf, Abdoallah

abdoallah.sharaf@agr.asu.edu.eg
Interests: Bioinformatics, Comparative Genomics, microRNAs, High throughput sequencing,
Internal ID: rp03508
  • 128 Scopus Citations
  • 48 PubMed Citations
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Full Name
Sharaf, Abdoallah
 
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abdoallah.sharaf@agr.asu.edu.eg
 
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Biography
I’m a senior bioinformatician SequAna - Sequencing Analysis Core Facility, University of Konstanz, Germany, and associate professor at Ain Shams University, Egypt. i passed several foreign stays at Western universities and scientific institutions, particularly in Italy, Spain, and the Czech Republic. Currently, i voluntarily co-chair the pilot project of the African BioGenome Project (AfricaBP).
Also, I have other small projects in progress to study microRNAs and transcriptome of different species and tissues. I have experience in NGS data analysis and big data analysis. My solid experience in the shell script, Python, and R programming, allows me to perform high-performance computing (HPC) for big data and to develop my scripts and in-house pipelines.

Publications

Results 1-20 of 46 (Search time: 0.0 seconds).

Issue DateTitleAuthor(s)
11-Dec-2025Unlocking the African bioeconomy and strengthening biodiversity conservation through genomics and bioinformaticsHayah, Ichrak; Ezebuiro, Victor; Kagame, Samuel Paul; Kuja, Josiah Ochieng; Waruhiu, Cecilia; Nesengani, Lucky Tendani; Mdyogolo, Sinebongo; Molotsi, Annelin Henriehetta; Abechi, Priscilla; Abushady, Asmaa Mohamed; Amor, Nabil; Andika, Brian; Barakat, Abdelhamid; Beedessee, Girish; Botes, Marietjie; David, Xavier; Ebuzoeme, Nzube; Edea, Zewdu; El Allali, Achraf; Elekima, Owanate Pearl; Elsherif, Assem Kadry; Gaouar, Semir Bechir Suheil; Gebre, Yohannes Gedamu; Georgewill, Owunari Abraham; Hadjeras, Lydia; Hassan, Mohammed Ahmed; Hijri, Mohamed; Houaga, Isidore; Ideozu, Justin Eze; Igoh, Matthias; Iwundu, Mary Paschal; Jaffer Ali, Syed Arif Sulthan; Jaouani, Atef; Kermouni Serradj, Ahmed Marwane; Khedim, Radjaa; Kilian, Mariëtte; Kivuva, Dennis Manthi; Knidiri, Mehdi; Koukoura, Komi Komi; Kwasi, Eleojo Roseline; Labuschagne, Kim; Mafwila, Antoine Lusala; Mensah, Isabel; Modebelu, Uzoma; Mokgokong, Prudent; Mokhtar, Morad M.; Muzemil, Sadik; Nigussie, Helen; Ntui, Valentine Otang; Ogwang, Joel; Olivier, Nicholas Abraham; Olufowobi, Olanrewaju; Omotoriogun, Taiwo Crossby; Folarin, Onikepe; Eromon, Philomena; Orina, Jeremiah; Ouardi, Faissal; Parish, Tracy; Peter, Mercy; Potgieter, Jacques; Radouani, Fouzia; Ramantswana, Madeleine; Reda, Shaimaa Roshdy Abdullah; Salifu, Samson Pandam; Schwartz, Sarah Bingaman; Shabangu, Ntji; Sharaf, Abdoallah ; Siminialayi, Iyeopu Minakiri; Smith, Rae Marvin; Taniguchi, Hiroaki; Tari-Ukuta, Preye Maureen; Tesfaye, Kassahun; Tmimi, Fatim Zohra; Tonfack, Libert Brice; Udensi, Ogbuagu Ugorji; Wambua, Victoria Wavinya; Wambua, Sammy; Were, Kennedy; Wood, Timipanipiri Thank God; Wurdeman, Bret Mark; Zoclanclounon, Yedomon Ange Bovys; Adu, Andrews Frimpong; Gillis-Harry, Sotonye Leslie; Opoku, Nicholas Kwasi Do Ohene; Tshilate, Thendo Stanley; Dede, Siyeofori; Minimah, Soala Obie; Tchiechoua, Yves Hermandez; Gisel, Andreas; Hamdi, Chadlia; Mafokwane, Tshepo; Odogwu, Blessing Adanta; Nwachukwu, Gift; Mungloo-Dilmohamud, Zahra; Ghodhbane-Gtari, Faten; Ibeachu, Chinagorom; Zipfel, Renate Dorothea; Madu, Wenceslaus C.; Okorocha, Johnpaul Chukwudi; Masebe, Tracy
21-Dec-2024Characterization and complete genome sequence of highly lytic phage active against methicillin-resistant Staphylococcus aureus (MRSA) isolated from EgyptEl-Tawab, Abeer K.Abd; Mansour, L.L. ; A.Sharaf ; El-Masry, Samar S; El-Arabi, T. F; Othman, B.A; Abd- Elghaffar, M.H; Eman, M. Marei; Sohar, A.Youssef
31-Dec-2024Structural and mechanistic insights into Quinolone Synthase to address its functional promiscuityVijayanathan, Mallika; Vadakkepat, Abhinav Koyamangalath; Mahendran, Kozhinjampara R.; Sharaf, Abdoallah ; Frandsen, Kristian E.H.; Bandyopadhyay, Debashree; Pillai, M. Radhakrishna; Soniya, Eppurath Vasudevan
41-Dec-2024A draft genome assembly of the reef-building coral Acropora hemprichii from the central Red SeaFiesinger, Anna; Buitrago-López, Carol; Sharaf, Abdoallah ; Cárdenas, Anny; Voolstra, Christian R.
51-Dec-2024Structural and mechanistic insights into Quinolone Synthase to address its functional promiscuityVijayanathan, Mallika; Vadakkepat, Abhinav Koyamangalath; Mahendran, Kozhinjampara R.; Sharaf, Abdoallah ; Frandsen, Kristian E.H.; Bandyopadhyay, Debashree; Pillai, M. Radhakrishna; Soniya, Eppurath Vasudevan
61-Aug-2024Establishing African genomics and bioinformatics programs through annual regional workshopsSharaf, Abdoallah ; Nesengani, Lucky Tendani; Hayah, Ichrak; Kuja, Josiah Ochieng; Mdyogolo, Sinebongo; Omotoriogun, Taiwo Crossby; Odogwu, Blessing Adanta; Beedessee, Girish; Smith, Rae Marvin; Barakat, Abdelhamid; Moila, Acclaim M.; El Hamouchi, Adil; Benkahla, Alia; Boukteb, Amal; Elmouhtadi, Amine; Mafwila, Antoine Lusala; Abushady, Asmaa Mohammed; Elsherif, Assem Kadry; Ahmed, Bulbul; Wairuri, Charles; Ndiribe, Charlotte C.; Ebuzome, Chukwuike; Kinnear, Craig J.; Ndlovu, Deborah Fay; Iraqi, Driss; El Fahime, Elmostafa; Assefa, Ermias; Ouardi, Faissal; Belharfi, Fatima Zohra; Tmimi, Fatim Zohra; Markey, Fatu Badiane; Radouani, Fouzia; Zeukeng, Francis; Mvumbi, Georges Lelo; Ganesan, Hamilton; Hanachi, Mariem; Nigussie, Helen; Charoute, Hicham; Benamri, Ichrak; Mkedder, Ikram; Haddadi, Imane; Meftah-Kadmiri, Issam; Mubiru, Jackson Franco; Domelevo Entfellner, Jean Baka Kodjo; Rokani, Joan Bayowa; Ogwang, Joel; Daiga, Jude Bigoga; Omumbo, Judy; Ideozu, Justin Eze; Errafii, Khaoula; Labuschagne, Kim; Komi, Komi Koukoura; Tonfack, Libert Brice; Hadjeras, Lydia; Ramantswana, Madeleine; Chaisi, Mamohale; Botes, Marietjie W.; Kilian, Mariëtte; Kvas, Marija; Melloul, Marouane; Chaouch, Melek; Khyatti, Meriem; Abdo, Michael; Phasha-Muchemenye, Mmatshepho; Hijri, Mohamed; Mediouni, Mohammed Rida; Hassan, Mohammed Ahmed; Piro, Mohammed; Mwale, Monica; Maaloum, Mossaab; Mavhunga, Mudzuli; Olivier, Nicholas Abraham; Aminou, Oumaima; Arbani, Oumayma; Souiai, Oussema; Djocgoue, Pierre François; Mentag, Rachid; Zipfel, Renate Dorothea; Tata, Rolland Bantar; Megnekou, Rosette; Muzemil, Sadik; Paez, Sadye; Salifu, Samson Pandam; Kagame, Samuel Paul; Selka, Sarra; Edwards, Sean; Gaouar, Semir Bechir Suheil; Reda, Shaimaa Roshdy Abdullah; Fellahi, Siham; Khayi, Slimane; Ayed, Soumia; Madisha, Thabang; Sahil, Tulsi; Udensi, Ogbuagu Ugorji; Ras, Verena; Ezebuiro, Victor; Duru, Vincent C.; David, Xavier; Geberemichael, Yonas; Tchiechoua, Yves H.
71-Dec-2023Biochemical and genotyping analyses of camels (Camelus dromedaries) trypanosomiasis in North AfricaDarwish, Ahmed M.; Sharaf, Abdoallah ; Gaouar, Semir Bechir Suheil; Ali, Neama I.; El-Aziz, Tamer H.Abd; Abushady, Asmaa M.; Kaouadji, Zoubeyda; Othman, Othman E.; Obornik, Miroslav
81-Sep-2023Bridging the gap in African biodiversity genomics and bioinformaticsSharaf, Abdoallah ; Ndiribe, Charlotte C.; Omotoriogun, Taiwo Crossby; Abueg, Linelle; Badaoui, Bouabid; Badiane Markey, Fatu J.; Beedessee, Girish; Diouf, Diaga; Duru, Vincent C.; Ebuzome, Chukwuike; Eziuzor, Samuel C.; Jaufeerally Fakim, Yasmina; Formenti, Giulio; Ghanmi, Nidhal; Guerfali, Fatma Zahra; Houaga, Isidore; Ideozu, Justin Eze; Katee, Sally Mueni; Khayi, Slimane; Kuja, Josiah O.; Kwon-Ndung, Emmanuel Hala; Marks, Rose A.; Moila, Acclaim M.; Mungloo-Dilmohamud, Zahra; Muzemil, Sadik; Nigussie, Helen; Osuji, Julian O.; Ras, Verena; Tchiechoua, Yves H.; Zoclanclounon, Yedomon Ange Bovys; Tolley, Krystal A.; Ziyomo, Cathrine; Mapholi, Ntanganedzeni; Muigai, Anne W.T.; Djikeng, Appolinaire; Ebenezer, Thank God Echezona
91-Mar-2023Transcriptome Dynamics in Triticum aestivum Genotypes Associated with Resistance against the Wheat Dwarf VirusSharaf, Abdoallah ; Nuc, Przemysław; Ripl, Jan; Alquicer, Glenda; Ibrahim, Emad; Wang, Xifeng; Maruthi, Midatharahally N.; Kundu, Jiban Kumar
101-Jul-2022Phylogenetic profiling resolves early emergence of PRC2 and illuminates its functional coreSharaf, Abdoallah ; Vijayanathan, Mallika; Oborník, Miroslav; Mozgová, Iva
113-Jan-2021The First Report for the Presence of Spiroplasma and Rickettsia in Red Palm Weevil Rhynchophorus ferrugineus (Coleoptera: Curculionidae) in EgyptAwad, Mona; Sharaf, Abdoallah ; Elrahman, Tahany Abd; El-Saadany, Hassan Mohamed; ElKraly, Omnia Abdullah; Elnagdy, Sherif M
121-Sep-2020Identification of some Egyptian leafhopper species (Hemiptera: Cicadellidae) using DNA barcodingEmam, Azza K.; Ibrahim, Heba E.; Helmi, Ashraf; Sharaf, Abdoallah 
132020Identification of some Egyptian leafhopper species (Hemiptera: Cicadellidae) using DNA barcodingEmam, AK; Ibrahim, HE; Helmi, A; A.Sharaf 
141-Nov-2019Isolation of plastids and mitochondria from Chromera veliaSharaf, Abdoallah ; Füssy, Zoltán; Tomčala, Aleš; Richtová, Jitka; Oborník, Miroslav
151-Nov-2019Transcriptomic analysis reveals the roles of detoxification systems in response to mercury in Chromera veliaSharaf, Abdoallah ; De Michele, Roberto; Sharma, Ayush; Fakhari, Safieh; Oborník, Miroslav
16Nov-2019Isolation of plastids and mitochondria from Chromera veliaSharaf, Abdoallah 
1724-Oct-2019Transcriptomic Analysis Reveals the Roles of Detoxification Systems in Response to Mercury in Chromera veliaSharaf, Abdoallah 
181-Aug-2019Characterization of aminoacyl-tRNA synthetases in chromeridsSharaf, Abdoallah ; Gruber, Ansgar; Jiroutová, Kateřina; Oborník, Miroslav
192019Characterization of Aminoacyl-tRNA Synthetases in ChromeridsSharaf, Abdoallah 
2010-Dec-2018Characterization and comparative genomic analysis of virulent and temperate Bacillus megaterium bacteriophagesSharaf, Abdoallah